BioCARLA

BioCARLA

Agenda | Tuesday October 5, 2021

Time of Guadalajara (GMT -5)

  • 11:00 - 11:20
    Laureant Dardenne, Laboratorio Nacional de Computación Científica, LNCC, Brazil.
    "DockThor-VS: A high-throughput virtual screening molecular docking platform coupled to the Brazilian supercomputer Santos Dumont".
     
  • 11:20 - 11:40
    Denis Jacob Machado, Universidad de Charlotte, UNC, USA.
    "The HPC bottlenecks in the genomic surveillance of SARS-CoV-2".
     
  • 11:40 - 12:00
    Cristian Enrique Cadena Caballero, Universidad Industrial de Santander, Colombia.
    “High Performance Computing applied to viral genomic diagnosis and sequencing for epidemiological surveillance”.
     
  • 12:00 - 12:15
    Break
     
  • 12:15 - 12:35
    Nicole de Miranda Scherer, Instituto Nacional del Cancer, INCA, Brazil.
    "The Red Queen dynamics of a bioinformatics platform".
     
  • 12:35 - 12:55
    Dante Travisany, Universidad de las Américas, Chile.
    "Towards a bioinformatics platform for Chilean SARS-CoV-2 genomes".
     
  • 12:55 - 13:15
    Fabricio Alves Barbosa da Silva, Fundación Oswaldo Cruz Fiocruz, FIOCRUZ, Brazil.
    "CellHeap: a Workflow for Processing COVID-19 Single-Cell RNA-seq Datasets in Supercomputers".
     
  • 13:15 - 13:35
    Marcela María Mecado Reyes, Instituto Nacional de Salud, INS, Colombia.
    "Creation of the National SARS-CoV-2 Genomic Characterization Program in Colombia".
     
  • 13:35 - 14:00
    Cierre y mesa redonda:
    "Supercomputación en la Nueva Realidad Biológica y Médica en el Contexto Latinoamericano".
Synopsis:

There has been a revolution in the way biology research is driven by the intensive use of computing resources from supercomputers to specialized high-performance environments. New high-throughput laboratory methods such as DNA microarray or Next-generation sequencing (NGS) produce several complex genomic data that describe gene expression levels, protein-protein interactions, and other information about how genes and proteins interact in living cells. They require an HPC vision and direction for leveraging on-demand management HPC bioinformatics systems.

This workshop will cover topics related to the interoperability of supercomputing and bioinformatics technologies that are being leveraged by real use cases and research infrastructure with a goal to improve the performance and efficiency of extreme-scale scientific workflows in several areas of bioinformatics and computational biology.

Emerging requirements from bioinformatics applications supported by HPC technologies offer new opportunities for engagement between the Latinoamerican bioinformatics communities.

Invited Speaker:
Marcela Mercado Reyes

Chair(s):
  • Francisco José Martínez Pérez
  • Kary Ann del Carmen Ocaña Gautherot